NDLI: Stochastic modeling of second order reactions using a moment propagation method

Content Provider	IEEE Xplore Digital Library
Author	Mane, V. Bugallo, M.F. Djuric, P.M.
Copyright Year	2009
Description	Author affiliation: Department of Electrical and Computer Engineering, Stony Brook University, NY 11794, USA (Mane, V.; Bugallo, M.F.; Djuric, P.M.)
Abstract	The traditional methods for solving the chemical master equation are based on Monte Carlo methods, such as the stochastic simulation algorithm (SSA) and its accelerated versions. Methods for modeling biochemical networks based on moment propagation are a relatively unexplored area. In a prior paper, we addressed first-order reactions and presented a new method for propagating the first two moments of the probability distributions of the number of molecules over time. In this paper we extend this method to second order reactions and demonstrate its performance on some simple networks.
Starting Page	1
Ending Page	4
File Size	142761
Page Count	4
File Format	PDF
ISBN	9781424447619
DOI	10.1109/GENSIPS.2009.5174358
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2009-05-17
Publisher Place	USA
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Proteins Computational modeling Computer simulation Chemical engineering Stochastic processes Differential equations Probability distribution Computer networks Acceleration Gene expression
Content Type	Text
Resource Type	Article

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Stochastic modeling of second order reactions using a moment propagation method