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Author Ferragina, Paolo ♦ Gonzlez, Rodrigo ♦ Navarro, Gonzalo ♦ Venturini, Rossano
Source ACM Digital Library
Content type Text
Publisher Association for Computing Machinery (ACM)
File Format PDF
Copyright Year ©2009
Language English
Subject Domain (in DDC) Computer science, information & general works ♦ Computer programming, programs & data
Subject Keyword Text indexing ♦ Bioinformatics databases ♦ Coding and information theory ♦ Data storage representation ♦ Data structures ♦ Indexing methods ♦ Text compression ♦ Textual databases
Abstract A compressed full-text self-index represents a text in a compressed form and still answers queries efficiently. This represents a significant advancement over the (full-)text indexing techniques of the previous decade, whose indexes required several times the size of the text. Although it is relatively new, this algorithmic technology has matured up to a point where theoretical research is giving way to practical developments. Nonetheless this requires significant programming skills, a deep engineering effort, and a strong algorithmic background to dig into the research results. To date only isolated implementations and focused comparisons of compressed indexes have been reported, and they missed a common API, which prevented their re-use or deployment within other applications. The goal of this article is to fill this gap. First, we present the existing implementations of compressed indexes from a practitioner's point of view. Second, we introduce the $\textit{Pizza&Chili}$ site, which offers tuned implementations and a standardized API for the most successful compressed full-text self-indexes, together with effective test-beds and scripts for their automatic validation and test. Third, we show the results of our extensive experiments on these codes with the aim of demonstrating the practical relevance of this novel algorithmic technology.
ISSN 10846654
Age Range 18 to 22 years ♦ above 22 year
Educational Use Research
Education Level UG and PG
Learning Resource Type Article
Publisher Date 2009-02-01
Publisher Place New York
e-ISSN 10846654
Journal Journal of Experimental Algorithmics (JEA)
Volume Number 13
Page Count 20
Starting Page 1.12
Ending Page 1.31

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Source: ACM Digital Library